fingers crossed #7
Workflow file for this run
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| name: Docker Build (manual) | ||
| env: | ||
| DEFAULT_R_VERSION: 4.4 | ||
| on: | ||
| push: | ||
| branches: | ||
| - main | ||
| - develop | ||
| tags: | ||
| - "v*.*.*" | ||
| pull_request: | ||
| merge_group: | ||
| workflow_dispatch: | ||
| inputs: | ||
| r_version: | ||
| description: 'R version to use' | ||
| required: true | ||
| type: choice | ||
| default: "$DEFAULT_R_VERSION" | ||
| options: | ||
| - 4.1 | ||
| - 4.2 | ||
| - 4.3 | ||
| - 4.4 | ||
| - devel | ||
| schedule: | ||
| # 1:30 AM UTC, different R version each day | ||
| - cron: '30 1 * * 1' # Rdevel | ||
| - cron: '30 1 * * 2' # R4.4 | ||
| - cron: '30 1 * * 3' # R4.3 | ||
| - cron: '30 1 * * 4' # R4.2 | ||
| - cron: '30 1 * * 5' # R4.1 | ||
| jobs: | ||
| # ---------------------------------------------------------------------- | ||
| # Set R version. | ||
| # This is a hack: We really just want a global env var here, but it seems | ||
| # `env:` values can't be passed into a `jobs.<jobid>.with` context | ||
| # (see https://github.com/actions/runner/issues/2372). | ||
| # As an ugly workaround, we assign it to a job output instead. | ||
| # ---------------------------------------------------------------------- | ||
| rversion: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - id: mon | ||
| if: github.event.schedule == '30 1 * * 1' | ||
| run: echo "R_VERSION=devel" >> "$GITHUB_OUTPUT" | ||
| - id: tue | ||
| if: github.event.schedule == '30 1 * * 2' | ||
| run: echo "R_VERSION=4.4" >> "$GITHUB_OUTPUT" | ||
| - id: wed | ||
| if: github.event.schedule == '30 1 * * 3' | ||
| run: echo "R_VERSION=4.3" >> "$GITHUB_OUTPUT" | ||
| - id: thu | ||
| if: github.event.schedule == '30 1 * * 4' | ||
| run: echo "R_VERSION=4.2" >> "$GITHUB_OUTPUT" | ||
| - id: fri | ||
| if: github.event.schedule == '30 1 * * 5' | ||
| run: echo "R_VERSION=4.1" >> "$GITHUB_OUTPUT" | ||
| - id: default | ||
| if: github.event_name != 'schedule' | ||
| run: echo "R_VERSION=${{ github.event.inputs.r_version || env.DEFAULT_R_VERSION }}" >> "$GITHUB_OUTPUT" | ||
| outputs: | ||
| # Note: "steps.*" seems to mean "all step ids", not "all steps" | ||
| # If seeing weird results here, check that all steps above have an id set. | ||
| R_VERSION: ${{ join(steps.*.outputs.R_VERSION, '') }} | ||
| depends: | ||
| name: depends / build | ||
| needs: [rversion] | ||
| runs-on: ubuntu-latest | ||
| permissions: | ||
| packages: write | ||
| env: | ||
| R_VERSION: ${{ needs.rversion.outputs.R_VERSION }} | ||
| DEFAULT_R_VERSION: 4.4 | ||
| PUSH: ${{ github.event_name != 'pull_request' }} | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - name: Set up QEMU | ||
| uses: docker/setup-qemu-action@v3 | ||
| - name: Set up Docker Buildx | ||
| id: buildx | ||
| uses: docker/setup-buildx-action@v3 | ||
| - name: Login to DockerHub | ||
| if: ${{ env.PUSH == 'true' && secrets.DOCKERHUB_USERNAME != '' }} | ||
| uses: docker/login-action@v3 | ||
| with: | ||
| username: ${{ secrets.DOCKERHUB_USERNAME }} | ||
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | ||
| - name: Login to GitHub Container Registry | ||
| if: ${{ env.PUSH == 'true' }} | ||
| uses: docker/login-action@v3 | ||
| with: | ||
| registry: ghcr.io | ||
| username: ${{ github.repository_owner }} | ||
| password: ${{ secrets.GITHUB_TOKEN }} | ||
| # ---------- helper: emit tags for a target ---------- | ||
| - name: Docker meta (depends) | ||
| id: meta_depends | ||
| uses: docker/metadata-action@v5 | ||
| env: | ||
| is_default_R: ${{ env.R_VERSION == env.DEFAULT_R_VERSION }} | ||
| check_var: ${{ secrets.DOCKERHUB_USERNAME }} | ||
| with: | ||
| images: | | ||
| name=ghcr.io/${{ github.repository_owner }}/depends | ||
| name=pecan/depends,enable=${{ env.check_var != null }} | ||
| tags: | | ||
| type=schedule | ||
| type=ref,event=branch,enable=${{ env.is_default_R }} | ||
| type=ref,event=branch,suffix=-R${{ env.R_VERSION }} | ||
| type=ref,event=pr | ||
| type=semver,pattern={{version}},enable=${{ env.is_default_R }} | ||
| type=semver,pattern={{major}}.{{minor}},enable=${{ env.is_default_R }} | ||
| type=semver,pattern={{major}},enable=${{ env.is_default_R }} | ||
| type=semver,pattern={{version}},suffix=-R${{ env.R_VERSION }} | ||
| - name: Build & push depends | ||
| uses: docker/build-push-action@v6 | ||
| with: | ||
| context: docker/depends | ||
| file: docker/depends/Dockerfile | ||
| push: ${{ env.PUSH }} | ||
| platforms: linux/amd64 | ||
| cache-from: type=gha | ||
| cache-to: type=gha,mode=max | ||
| tags: ${{ steps.meta_depends.outputs.tags }} | ||
| labels: ${{ steps.meta_depends.outputs.labels }} | ||
| build-args: | | ||
| R_VERSION=${{ env.R_VERSION }} | ||
| GITHUB_PAT=${{ secrets.GITHUB_TOKEN }} | ||
| - name: Docker meta (base) | ||
| id: meta_base | ||
| uses: docker/metadata-action@v5 | ||
| env: | ||
| is_default_R: ${{ env.R_VERSION == env.DEFAULT_R_VERSION }} | ||
| check_var: ${{ secrets.DOCKERHUB_USERNAME }} | ||
| with: | ||
| images: | | ||
| name=ghcr.io/${{ github.repository_owner }}/base | ||
| name=pecan/base,enable=${{ env.check_var != null }} | ||
| tags: | | ||
| type=schedule | ||
| type=ref,event=branch,enable=${{ env.is_default_R }} | ||
| type=ref,event=branch,suffix=-R${{ env.R_VERSION }} | ||
| type=ref,event=pr | ||
| type=semver,pattern={{version}},enable=${{ env.is_default_R }} | ||
| type=semver,pattern={{major}}.{{minor}},enable=${{ env.is_default_R }} | ||
| type=semver,pattern={{major}},enable=${{ env.is_default_R }} | ||
| type=semver,pattern={{version}},suffix=-R${{ env.R_VERSION }} | ||
| - name: Build & push base | ||
| uses: docker/build-push-action@v6 | ||
| with: | ||
| context: . | ||
| file: docker/base/Dockerfile | ||
| push: ${{ env.PUSH }} | ||
| platforms: linux/amd64 | ||
| cache-from: type=gha | ||
| cache-to: type=gha,mode=max | ||
| tags: ${{ steps.meta_base.outputs.tags }} | ||
| labels: ${{ steps.meta_base.outputs.labels }} | ||
| build-args: | | ||
| R_VERSION=${{ env.R_VERSION }} | ||
| PARENT_IMAGE=ghcr.io/${{ github.repository_owner }}/depends | ||
| GITHUB_PAT=${{ secrets.GITHUB_TOKEN }} | ||
| - name: Docker meta (models) | ||
| id: meta_models | ||
| uses: docker/metadata-action@v5 | ||
| env: | ||
| is_default_R: ${{ env.R_VERSION == env.DEFAULT_R_VERSION }} | ||
| check_var: ${{ secrets.DOCKERHUB_USERNAME }} | ||
| with: | ||
| images: | | ||
| name=ghcr.io/${{ github.repository_owner }}/models | ||
| name=pecan/models,enable=${{ env.check_var != null }} | ||
| tags: | | ||
| type=schedule | ||
| type=ref,event=branch,enable=${{ env.is_default_R }} | ||
| type=ref,event=branch,suffix=-R${{ env.R_VERSION }} | ||
| type=ref,event=pr | ||
| type=semver,pattern={{version}},enable=${{ env.is_default_R }} | ||
| type=semver,pattern={{major}}.{{minor}},enable=${{ env.is_default_R }} | ||
| type=semver,pattern={{major}},enable=${{ env.is_default_R }} | ||
| type=semver,pattern={{version}},suffix=-R${{ env.R_VERSION }} | ||
| - name: Build & push models | ||
| uses: docker/build-push-action@v6 | ||
| with: | ||
| context: docker/models | ||
| file: docker/models/Dockerfile | ||
| push: ${{ env.PUSH }} | ||
| platforms: linux/amd64 | ||
| cache-from: type=gha | ||
| cache-to: type=gha,mode=max | ||
| tags: ${{ steps.meta_models.outputs.tags }} | ||
| labels: ${{ steps.meta_models.outputs.labels }} | ||
| build-args: | | ||
| R_VERSION=${{ env.R_VERSION }} | ||
| PARENT_IMAGE=ghcr.io/${{ github.repository_owner }}/base | ||
| GITHUB_PAT=${{ secrets.GITHUB_TOKEN }} | ||
| # ---- model binaries ---- | ||
| - name: Build model binaries (basgra, biocro, ed2_git, maespa, sipnet) | ||
| if: ${{ env.PUSH == 'true' }} | ||
| run: | | ||
| set -euo pipefail | ||
| build_model() { | ||
| local NAME=$1 | ||
| local CONTEXT=$2 | ||
| local FILE=$3 | ||
| local VERSION=$4 | ||
| local PLATFORM=$5 | ||
| echo "::group::meta $NAME" | ||
| echo "images=name=ghcr.io/${GITHUB_REPOSITORY_OWNER,,}/model-${NAME}-${VERSION}" > meta.hcl | ||
| echo "::endgroup::" | ||
| docker buildx build \ | ||
| --push \ | ||
| --platform "$PLATFORM" \ | ||
| --build-arg R_VERSION=${R_VERSION} \ | ||
| --build-arg PARENT_IMAGE=ghcr.io/${GITHUB_REPOSITORY_OWNER,,}/models \ | ||
| --build-arg MODEL_VERSION=${VERSION} \ | ||
| -t ghcr.io/${GITHUB_REPOSITORY_OWNER,,}/model-${NAME}-${VERSION} \ | ||
| -f $FILE $CONTEXT | ||
| } | ||
| build_model basgra models/basgra models/basgra/Dockerfile BASGRA_N_v1 linux/amd64 | ||
| build_model biocro models/biocro models/biocro/Dockerfile 0.95 linux/amd64 | ||
| build_model ed2 models/ed models/ed/Dockerfile git linux/amd64 | ||
| build_model maespa models/maespa models/maespa/Dockerfile git linux/amd64 | ||
| build_model sipnet models/sipnet models/sipnet/Dockerfile git linux/amd64 | ||
| # ---- baseplus (docs, executor, api) ---- | ||
| - name: Build & push baseplus: docs | ||
| uses: docker/build-push-action@v6 | ||
| with: | ||
| context: . | ||
| file: docker/docs/Dockerfile | ||
| push: ${{ env.PUSH }} | ||
| platforms: linux/amd64 | ||
| cache-from: type=gha | ||
| cache-to: type=gha,mode=max | ||
| tags: ghcr.io/${{ github.repository_owner }}/docs:latest | ||
| build-args: | | ||
| R_VERSION=${{ env.R_VERSION }} | ||
| - name: Build & push baseplus: executor | ||
| uses: docker/build-push-action@v6 | ||
| with: | ||
| context: docker/executor | ||
| file: docker/executor/Dockerfile | ||
| push: ${{ env.PUSH }} | ||
| platforms: linux/amd64 | ||
| cache-from: type=gha | ||
| cache-to: type=gha,mode=max | ||
| tags: ghcr.io/${{ github.repository_owner }}/executor:latest | ||
| build-args: | | ||
| R_VERSION=${{ env.R_VERSION }} | ||
| - name: Build & push baseplus: api | ||
| uses: docker/build-push-action@v6 | ||
| with: | ||
| context: apps/api | ||
| file: apps/api/Dockerfile | ||
| push: ${{ env.PUSH }} | ||
| platforms: linux/amd64 | ||
| cache-from: type=gha | ||
| cache-to: type=gha,mode=max | ||
| tags: ghcr.io/${{ github.repository_owner }}/api:latest | ||
| build-args: | | ||
| R_VERSION=${{ env.R_VERSION }} | ||
| # ---- extras (web, shiny-dbsync, data, monitor, rstudio-nginx) ---- | ||
| - name: Build & push extras: web | ||
| uses: docker/build-push-action@v6 | ||
| with: | ||
| context: . | ||
| file: docker/web/Dockerfile | ||
| push: ${{ env.PUSH }} | ||
| platforms: linux/amd64,linux/arm64 | ||
| cache-from: type=gha | ||
| cache-to: type=gha,mode=max | ||
| tags: ghcr.io/${{ github.repository_owner }}/web:latest | ||
| - name: Build & push extras: shiny-dbsync | ||
| uses: docker/build-push-action@v6 | ||
| with: | ||
| context: . | ||
| file: shiny/dbsync/Dockerfile | ||
| push: ${{ env.PUSH }} | ||
| platforms: linux/amd64 | ||
| cache-from: type=gha | ||
| cache-to: type=gha,mode=max | ||
| tags: ghcr.io/${{ github.repository_owner }}/shiny-dbsync:latest | ||
| build-args: | | ||
| R_VERSION=${{ env.R_VERSION }} | ||
| - name: Build & push extras: data | ||
| uses: docker/build-push-action@v6 | ||
| with: | ||
| context: docker/data | ||
| file: docker/data/Dockerfile | ||
| push: ${{ env.PUSH }} | ||
| platforms: linux/amd64,linux/arm64 | ||
| cache-from: type=gha | ||
| cache-to: type=gha,mode=max | ||
| tags: ghcr.io/${{ github.repository_owner }}/data:latest | ||
| - name: Build & push extras: monitor | ||
| uses: docker/build-push-action@v6 | ||
| with: | ||
| context: docker/monitor | ||
| file: docker/monitor/Dockerfile | ||
| push: ${{ env.PUSH }} | ||
| platforms: linux/amd64,linux/arm64 | ||
| cache-from: type=gha | ||
| cache-to: type=gha,mode=max | ||
| tags: ghcr.io/${{ github.repository_owner }}/monitor:latest | ||
| - name: Build & push extras: rstudio-nginx | ||
| uses: docker/build-push-action@v6 | ||
| with: | ||
| context: docker/rstudio-nginx | ||
| file: docker/rstudio-nginx/Dockerfile | ||
| push: ${{ env.PUSH }} | ||
| platforms: linux/amd64,linux/arm64 | ||
| cache-from: type=gha | ||
| cache-to: type=gha,mode=max | ||
| tags: ghcr.io/${{ github.repository_owner }}/rstudio-nginx:latest | ||
