bioSyntax-sublime/fasta-nt.sublime-syntax at master · Remi-Neal/bioSyntax-sublime · GitHub

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%YAML 1.2
---
# Fasta-Nucleotides syntax highlighting file
# Maintainer: bioSyntax.org
# Version: v0.1
name: fasta-nt
# See http://www.sublimetext.com/docs/3/syntax.html
file_extensions: []
scope: text.fasta-nt


contexts:
  main:

    #positive lookbehind to match a + and a new line to any characters right after it
    #pushes it to quality
    - match: "^>.*"
      scope: string

    # Match basic Nucleotides
    # match Adenosine
    - match: "[Aa]"
      scope: ntA

    # match Cytidine
    - match: "[Cc]"
      scope: ntC

    # match Guanine
    - match: "[Gg]"
      scope: ntG

    # match Thymidine
    - match: "[Tt]"
      scope: ntT

    # match Uridine
    - match: "[Uu]"
      scope: ntU

    # match aNy or unknown (X)
    - match: "[NnXx]"
      scope: ntN

    # indel
    - match: "[-]"
      scope: ntGap