DESCRIPTION

Package: coseq
Type: Package
Title: Co-Expression Analysis of Sequencing Data
Version: 1.17.2
Date: 2021-07-21
Authors@R: c(
  person(given="Andrea", 
         family="Rau", 
         email="andrea.rau@inrae.fr", 
         role=c("cre", "aut"), 
         comment = c(ORCID = "0000-0001-6469-488X")),
  person(given="Cathy",
         family="Maugis-Rabusseau",
         role="ctb"),
  person(given="Antoine",
         family="Godichon-Baggioni",
         role="ctb"))
Depends: R (>= 4.0.0), SummarizedExperiment, S4Vectors
Imports: edgeR, DESeq2, capushe, Rmixmod, e1071, BiocParallel, ggplot2, 
        scales, HTSFilter, corrplot, HTSCluster,
        grDevices, graphics, stats, methods, compositions, mvtnorm
Suggests: Biobase, knitr, rmarkdown, testthat, BiocStyle
Description: Co-expression analysis for expression profiles arising from
        high-throughput sequencing data. Feature (e.g., gene) profiles 
		are clustered using adapted transformations and mixture models or 
		a K-means algorithm, and model selection criteria
        (to choose an appropriate number of clusters) are provided.
biocViews: GeneExpression, RNASeq, Sequencing, Software, ImmunoOncology
License: GPL-3
LazyLoad: yes
Encoding: UTF-8
RoxygenNote: 7.1.1
VignetteBuilder: knitr