parallel-elastic-alignment/scale-and-crop-export at master · axtimwalde/parallel-elastic-alignment · GitHub

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#!/bin/bash

pwd="`pwd`"
export="$pwd/export"
jobs="$pwd/jobs"
logs="$jobs/log"

mkdir -p "$export/scale10"
#mkdir -p "$export/crop1"
#mkdir -p "$export/crop2"
mkdir -p "$export/crop"
mkdir -p "$jobs"
mkdir -p "$logs"

for file in `cd $export; ls | grep -P "\.tif$"`
do
	script="$jobs/export-scale-crop-$file.job"
	echo "#!/bin/bash" > "$script"
	echo "convert $export/$file -resize 10% $export/scale10/$file" >> "$script"
#	echo "convert $export/$file -crop 768x768+2900+2400 $export/crop1/$file" >> "$script"
#	echo "convert $export/$file -crop 768x768+1550+4500 $export/crop2/$file" >> "$script"
#	echo "convert $export/$file -crop 768x768+3970+5440 $export/crop/$file" >> "$script"
#	echo "convert $export/$file -crop 768x768+1400+4700 $export/crop/$file" >> "$script"
	echo "convert $export/$file -crop 2060x5120+3620+2220 $export/crop/$file" >> "$script"
	chmod a+x "$script"
	cd "$logs"
	qsub -cwd $script
	cd "$pwd"
done
cd "$pwd"