Hi all,
I was recently trying to use csvlink to filter the data from two well-formated data sets. I tried to follow the documentation but it was not working at all. I repeatedly got the following error despite the field "sample" being in both my files.
csvlink: error: Could not find field 'sample' in input
Ultimately, I was able to dump the CSV and notice my header was printing as \ufeffsample which left me to figure out this was a byte order mark (BOM) issue. I made the following change to csvlink.py and the code ran for me.
- self.input_1 = open(self.configuration['input'][0], encoding='utf-8').read()
+ self.input_1 = open(self.configuration['input'][0], encoding='utf-8-sig').read()
except IOError:
raise self.parser.error("Could not find the file %s" %
(self.configuration['input'][0], ))
try:
- self.input_2 = open(self.configuration['input'][1], encoding='utf-8').read()
+ self.input_2 = open(self.configuration['input'][1], encoding='utf-8-sig').read()
Hi all,
I was recently trying to use
csvlinkto filter the data from two well-formated data sets. I tried to follow the documentation but it was not working at all. I repeatedly got the following error despite the field "sample" being in both my files.csvlink: error: Could not find field 'sample' in inputUltimately, I was able to dump the CSV and notice my header was printing as
\ufeffsamplewhich left me to figure out this was a byte order mark (BOM) issue. I made the following change to csvlink.py and the code ran for me.