Hi,
Thanks for your amazing work!
I'm trying to integrate my timeseries experiment and all code does work out. However, once I want to plot using matplotlib it gives me this
font family ['Bitstream Vera Sans'] not found. Falling back to DejaVu Sans
It tried resetting my font by plt.rcParams['font.family'] = 'sans-serif', and while this removed the error it just didn't give any output. No plot and no text/information.
This is happening using both the integrated scanpy function as well as using the Harmony package itself. I noticed that when I just loaded scanpy and did not run the sc.external.tl.harmony_timeseries() yet, the umaps show just fine. As soon as I run the command I have this behaviour. However, when I do import Harmony from the start, the plots don't show.
Hope you can help me here!
Cheers,
Rijndert
Hi,
Thanks for your amazing work!
I'm trying to integrate my timeseries experiment and all code does work out. However, once I want to plot using matplotlib it gives me this
font family ['Bitstream Vera Sans'] not found. Falling back to DejaVu SansIt tried resetting my font by
plt.rcParams['font.family'] = 'sans-serif', and while this removed the error it just didn't give any output. No plot and no text/information.This is happening using both the integrated scanpy function as well as using the Harmony package itself. I noticed that when I just loaded scanpy and did not run the
sc.external.tl.harmony_timeseries()yet, the umaps show just fine. As soon as I run the command I have this behaviour. However, when I doimport Harmonyfrom the start, the plots don't show.Hope you can help me here!
Cheers,
Rijndert