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Installation

Compiling from C++

On Mac:

brew install gsl
brew install pkgconfig
make

(htslib is not required — we use only kseq.h, which is vendored as a single header in ext/htslib/. zlib is also linked, for transparent reading of gzipped FASTA, but it ships pre-installed on macOS and most Linux distributions and so is not listed above.)

Testing

npm install
make test

Installing via npm

The software is compiled to WebAssembly as machineboss on npm

npm install machineboss