diff --git a/matchminer/data_model.py b/matchminer/data_model.py index f29f761..50cee8f 100644 --- a/matchminer/data_model.py +++ b/matchminer/data_model.py @@ -1730,16 +1730,6 @@ def default_temporary(): 'short_title': {'type':'string', 'nullable': True} } -prioritizer_trial_match_schema = { - 'trial_id': {'type': 'string'}, - 'patient_id': {'type': 'string'}, - 'sample_id': {'type': 'string'}, - 'code': {'type': 'string'}, - 'drug_name': {'type': 'string'}, - 'match_type': {'type': 'string', 'nullable': True}, - 'vital_status': {'type': 'string', 'allowed': ['alive', 'deceased'], 'nullable': True}, -} - negative_genomic_schema = { 'clinical_id': {'type': 'objectid', 'data_relation': {'resource': 'clinical'}, 'required': True}, 'sample_id': {'type': 'string', 'required': True}, diff --git a/matchminer/settings_dev.py b/matchminer/settings_dev.py index 4900572..189e5c5 100644 --- a/matchminer/settings_dev.py +++ b/matchminer/settings_dev.py @@ -232,17 +232,6 @@ 'item_methods': ['GET'] } -prioritizer_trial_match = { - 'schema': matchminer.data_model.prioritizer_trial_match_schema, - 'datasource': { - 'source': 'trial_match' - }, - 'allow_unknown': False, - 'allowed_read_roles': ["admin", "service", "oncologist", "cti"], - 'allowed_write_roles': ["admin", "service", "oncologist", "cti"], - 'item_methods': ['GET'] -} - negative_genomic = { 'schema': matchminer.data_model.negative_genomic_schema, 'allow_unknown': False, @@ -294,7 +283,6 @@ 'trial_match': trial_match, 'ctims_trial_match': ctims_trial_match, 'ctims_viewer_trial_match': ctims_viewer_trial_match, - 'prioritizer_trial_match': prioritizer_trial_match, 'negative_genomic': negative_genomic, 'patient_view': patient_view, 'enrollment': enrollment, diff --git a/requirements.txt b/requirements.txt index cbc6c7c..e9272c6 100644 --- a/requirements.txt +++ b/requirements.txt @@ -74,7 +74,6 @@ markupsafe==2.0.1 # via # -r requirements.in # jinja2 -# matchengine-v2 @ git+https://github.com/pughlab/matchengine-V2.git@anton-dockerize # pmatchengine @ git+git@github.com/dfci/pmatchengine.git@pugh-lab # via -r requirements.in mattermostdriver==6.2.0