|
2 | 2 | import pytest |
3 | 3 | from pydna.dseqrecord import Dseqrecord |
4 | 4 | from pydna.assembly import Assembly |
5 | | -from pydna import contig |
| 5 | + |
6 | 6 | from pydna._pretty import pretty_str |
7 | 7 | from pydna.amplify import pcr |
8 | 8 | from pydna.parsers import parse_primers |
@@ -86,24 +86,6 @@ def test_contig_circular(): |
86 | 86 |
|
87 | 87 | return cont.figure_mpl() |
88 | 88 |
|
89 | | - from unittest.mock import MagicMock |
90 | | - |
91 | | - pp = MagicMock() |
92 | | - |
93 | | - cont._repr_pretty_(pp, None) |
94 | | - |
95 | | - pp.text.assert_called_with("Contig(o59)") |
96 | | - |
97 | | - from Bio.Seq import Seq |
98 | | - |
99 | | - from pydna.seqrecord import SeqRecord |
100 | | - |
101 | | - arg = SeqRecord(Seq("aaa")) |
102 | | - |
103 | | - import networkx as nx |
104 | | - |
105 | | - contig.Contig.from_SeqRecord(arg, graph=nx.MultiDiGraph()) |
106 | | - |
107 | 89 |
|
108 | 90 | def test_reverse_complement(): |
109 | 91 |
|
@@ -314,14 +296,10 @@ def test_mpl3(): |
314 | 296 | fragment.name = target.strip() |
315 | 297 | fragments.append(fragment) |
316 | 298 |
|
317 | | - asm = Assembly(fragments) |
318 | | - |
319 | | - cps = asm.assemble_circular() |
| 299 | + asm3 = Assembly(fragments) |
320 | 300 |
|
321 | | - cp = cps[0] |
322 | | - |
323 | | - return cp.figure_mpl() |
| 301 | + cps3 = asm3.assemble_circular() |
324 | 302 |
|
| 303 | + cp3 = cps3[0] |
325 | 304 |
|
326 | | -if __name__ == "__main__": |
327 | | - pytest.main([__file__, "-vv", "-s"]) |
| 305 | + return cp3.figure_mpl() |
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