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Update bgc spinup section #3998

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Update bgc spinup section #3998

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6cbfd89
Update first paragraph of bgc spinup section
slevis-lmwg May 6, 2026
1859920
Plans for updating Figure 1.5.3 in the form of comments
slevis-lmwg May 6, 2026
98c4396
Include the SASU step and figure placeholder
slevis-lmwg May 6, 2026
d43537d
Temporary fix to the figure failures; still need new figures though
slevis-lmwg May 6, 2026
df9c784
Add the new pSASU step and modify some existing relevant things
slevis-lmwg May 6, 2026
b4d044f
Add placeholder for pSASU figure
slevis-lmwg May 6, 2026
92ca692
Merge branch 'b4b-dev' into bgcspinups_sec1.5.7
slevis-lmwg May 11, 2026
0098111
Updates to the bgc spinup section of the User's Guide
slevis-lmwg May 12, 2026
6c7eaaf
Add subsection on the SpinupStability.ncl scripts
slevis-lmwg May 13, 2026
214f3c6
Replace placeholder figures with the new figures
slevis-lmwg May 13, 2026
89fcb46
Remove old .png files and add new .png files
slevis-lmwg May 13, 2026
2150db1
Refer to prev. section for useful info and update some quote marks
slevis-lmwg May 13, 2026
3ad82f4
Remove the version number and change BGC to BGC-Crop throughout
slevis-lmwg May 14, 2026
fb5cd44
Replace pSASU with "normal mode" except in shorthand, eg for case names
slevis-lmwg May 14, 2026
4b6ecf1
Adding ./xmlchange MOSART_MODE=NULL
slevis-lmwg May 14, 2026
5d0baea
Add --run-unsupported to the create_newcases
slevis-lmwg May 14, 2026
be15522
Update doc/source/users_guide/running-special-cases/Spinning-up-the-b…
slevis-lmwg May 14, 2026
bb1ce44
Clarify the location of the /archive and /run directories
slevis-lmwg May 14, 2026
fe4ce58
Add CLM_ACCELERATED_SPINUP to sasu and off cases and correct setup order
slevis-lmwg May 14, 2026
8b2222d
Change some > to # to indicate comments
slevis-lmwg May 14, 2026
19cebdd
Change 160 yrs to 200 for consistency with the example
slevis-lmwg May 14, 2026
8cc64a9
Merge remote-tracking branch 'slevis-lmwg/bgcspinups_sec1.5.7' into b…
slevis-lmwg May 14, 2026
2bc4a28
Correct a figure reference
slevis-lmwg May 15, 2026
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147 changes: 88 additions & 59 deletions ...sers_guide/running-special-cases/Spinning-up-the-biogeochemistry-BGC-spinup.rst
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3 changes: 3 additions & 0 deletions ...de/running-special-cases/ctsm5.4.CMIP7_ciso_ctsm5.3.075_f09_124_AD_Spinup-0.png
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3 changes: 3 additions & 0 deletions .../running-special-cases/ctsm5.4.CMIP7_ciso_ctsm5.3.075_f09_124_SASU_Spinup-0.png
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3 changes: 3 additions & 0 deletions ...running-special-cases/ctsm5.4.CMIP7_ciso_ctsm5.3.075_f09_124_pSASU_Spinup-0.png
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3 changes: 0 additions & 3 deletions doc/source/users_guide/running-special-cases/image3.png
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3 changes: 0 additions & 3 deletions doc/source/users_guide/running-special-cases/image4.png
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3 changes: 0 additions & 3 deletions doc/source/users_guide/running-special-cases/image5.png
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3 changes: 0 additions & 3 deletions doc/source/users_guide/running-special-cases/image6.png
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