Here we describe the workflow for our multi omics analysis pipeline.
#####Workflow diagram specific to the work for our manuscript is shown below:
######To perform class comparison in R Use function t.test(). Some nice examples for this function can be found [here] (http://www.statmethods.net/stats/ttest.html)
######To perform SVM in R Use package e1071
######RF-ACE To read more about the RF-ACE (Random Forest - Artificial Contrasts with Ensembles) method see here. The google code can be found here
#####Citation: Subha Madhavan et al, Genome-wide multi-omics profiling of colorectal cancer identifies immune determinants strongly associated with relapse, Frontiers in Genetics, Nov 2013. doi: 10.3389.
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