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Waters reader: zarr save fails with 'int' object has no attribute 'split' on format_specific.function_types

Status: Open.

#91 In M4i-Imaging-Mass-Spectrometry/thyra;

· Tomatokeftes opened on May 1, 2026

Pixel size auto-detection reads BeamScanSizeX/Y instead of .mis Raster, gives 2x wrong pitch when oversampled

Status: Open.

#90 In M4i-Imaging-Mass-Spectrometry/thyra;

· Tomatokeftes opened on Apr 28, 2026

--region selects DB RegionNumber, not .mis Area Name — silent mismatch causes wrong region to be converted

Status: Open.

#89 In M4i-Imaging-Mass-Spectrometry/thyra;

· Tomatokeftes opened on Apr 28, 2026

--region flag filters spectra but does not crop output dimensions to the selected region

Status: Open.

#88 In M4i-Imaging-Mass-Spectrometry/thyra;

· Tomatokeftes opened on Apr 28, 2026

Output size estimator uses hardcoded 10,000-bin fallback when target_bins is None

Status: Open.

#87 In M4i-Imaging-Mass-Spectrometry/thyra;

· Tomatokeftes opened on Apr 28, 2026

RFC: Unified MSI Metadata Schema (FAIR-compliant)

enhancementNew feature or requestNew feature or request

FAIRFAIR data principlesFAIR data principles

metadataMetadata handling and schemaMetadata handling and schema

Status: Open.

#67 In M4i-Imaging-Mass-Spectrometry/thyra;

· Tomatokeftes opened on Dec 15, 2025

Add full interactive calibration state selection

low priorityLow priority - will not be actively worked onLow priority - will not be actively worked on

Status: Open.

#54 In M4i-Imaging-Mass-Spectrometry/thyra;

· Tomatokeftes opened on Nov 13, 2025

[FEATURE] Proper 3D MSI implementation

enhancementNew feature or requestNew feature or request

Status: Open.

#39 In M4i-Imaging-Mass-Spectrometry/thyra;

· Tomatokeftes opened on Aug 12, 2025