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Reorganizing ParmEst and Pyomo.DoE Documentation Pages#3904

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slilonfe5:parmest-doe-doc-reorg
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Reorganizing ParmEst and Pyomo.DoE Documentation Pages#3904
slilonfe5 wants to merge 23 commits into
Pyomo:mainfrom
slilonfe5:parmest-doe-doc-reorg

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@slilonfe5 slilonfe5 commented Apr 3, 2026

Fixes # .

Summary/Motivation:

The ParmEst and Pyomo.DoE documentation webpages need a major reorganization ahead of the American Control Conference Workshop in May. This update will enable new/existing users to access recent/forthcoming capabilities in ParmEst and Pyomo.DoE

Changes proposed in this PR:

  • Remove outdated/non-informative pages from the ParmEst and Pyomo.DoE documentation webpages
  • Update documentation files to capture important features/capabilities in ParmEst and Pyomo.DoE as listed below.
    Proposed ParmEst documentation page:
    - Overview
    - Installation Instructions
    - Quick Start Guide
    - Objective Options
    - Uncertainty Quantification
    - Estimability Analysis
    Proposed Pyomo.DoE documentation page:
    - Overview
    - Quick Start Guide
    - Experiment Abstraction
    - Objective Options
    - Multiple Experiments
    - Parameter Uncertainty

Legal Acknowledgement

By contributing to this software project, I have read the contribution guide and agree to the following terms and conditions for my contribution:

  1. I agree my contributions are submitted under the BSD license.
  2. I represent I am authorized to make the contributions and grant the license. If my employer has rights to intellectual property that includes these contributions, I represent that I have received permission to make contributions and grant the required license on behalf of that employer.

@slilonfe5 slilonfe5 marked this pull request as ready for review April 7, 2026 16:08
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slilonfe5 commented Apr 7, 2026

@mrmundt @blnicho @jsiirola @adowling2, This PR is ready for review. As mentioned in the description, we want to reorganize the documentation webpages of ParmEst and Pyomo.DoE into a structure that is informative, capturing the most up-to-date capabilities, ahead of the ACC Pyomo workshop in May. This PR is meant to create background documentation files and structures for @sscini and @smondal13 to quickly update after their PRs get merged.

A major question is whether we should remove the other existing ParmEst documentation pages (e.g., data reconciliation, scenario creation).

Thank you.

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codecov Bot commented Apr 8, 2026

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 89.93%. Comparing base (3d3ffae) to head (dbe9f2c).
⚠️ Report is 295 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##             main    #3904      +/-   ##
==========================================
- Coverage   89.93%   89.93%   -0.01%     
==========================================
  Files         902      902              
  Lines      106393   106393              
==========================================
- Hits        95683    95680       -3     
- Misses      10710    10713       +3     
Flag Coverage Δ
builders 29.19% <ø> (+<0.01%) ⬆️
default 86.23% <ø> (?)
expensive 35.64% <ø> (?)
linux 87.38% <ø> (-2.04%) ⬇️
linux_other 87.38% <ø> (ø)
oldsolvers 28.10% <ø> (+<0.01%) ⬆️
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@blnicho blnicho self-requested a review May 5, 2026 19:01
@sscini sscini moved this from Development to Ready for design review in ParmEst & Pyomo.DoE Development May 6, 2026
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Overall this is pretty straightforward, but I have a number of suggested changes.

Comment thread doc/OnlineDocs/explanation/analysis/doe/overview.rst Outdated
Comment thread doc/OnlineDocs/explanation/analysis/doe/overview.rst Outdated
Comment thread doc/OnlineDocs/explanation/analysis/doe/guide.rst Outdated
Comment thread doc/OnlineDocs/explanation/analysis/doe/guide.rst Outdated
Comment thread doc/OnlineDocs/explanation/analysis/doe/guide.rst Outdated
Comment thread doc/OnlineDocs/explanation/analysis/doe/abstraction.rst Outdated
Comment thread doc/OnlineDocs/explanation/analysis/doe/uncertainty.rst Outdated
Comment thread doc/OnlineDocs/explanation/analysis/parmest/covariance.rst Outdated
Comment thread doc/OnlineDocs/explanation/analysis/parmest/estimability.rst Outdated
Comment thread doc/OnlineDocs/explanation/analysis/parmest/objective.rst Outdated
Comment thread doc/OnlineDocs/explanation/analysis/doe/guide.rst Outdated
Comment thread doc/OnlineDocs/explanation/analysis/doe/guide.rst Outdated
Comment thread doc/OnlineDocs/explanation/analysis/doe/guide.rst
Comment thread doc/OnlineDocs/explanation/analysis/doe/guide.rst Outdated
Comment thread doc/OnlineDocs/explanation/analysis/doe/guide.rst Outdated
Comment thread doc/OnlineDocs/explanation/analysis/doe/guide.rst Outdated
Comment thread doc/OnlineDocs/explanation/analysis/doe/guide.rst Outdated
Comment thread doc/OnlineDocs/explanation/analysis/doe/overview.rst Outdated
Comment thread doc/OnlineDocs/explanation/analysis/doe/overview.rst Outdated
Comment thread doc/OnlineDocs/explanation/analysis/doe/overview.rst Outdated
Comment thread doc/OnlineDocs/explanation/analysis/doe/overview.rst Outdated
Comment thread doc/OnlineDocs/explanation/analysis/parmest/estimability.rst Outdated
Co-authored-by: John Siirola <jsiirola@users.noreply.github.com>
slilonfe5 and others added 10 commits May 9, 2026 15:40
Co-authored-by: John Siirola <jsiirola@users.noreply.github.com>
Co-authored-by: John Siirola <jsiirola@users.noreply.github.com>
Co-authored-by: John Siirola <jsiirola@users.noreply.github.com>
Co-authored-by: John Siirola <jsiirola@users.noreply.github.com>
Co-authored-by: John Siirola <jsiirola@users.noreply.github.com>
Co-authored-by: John Siirola <jsiirola@users.noreply.github.com>
Co-authored-by: John Siirola <jsiirola@users.noreply.github.com>
Co-authored-by: John Siirola <jsiirola@users.noreply.github.com>
Co-authored-by: John Siirola <jsiirola@users.noreply.github.com>
Co-authored-by: John Siirola <jsiirola@users.noreply.github.com>
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slilonfe5 commented May 12, 2026

@jsiirola I have implemented all the comments on this PR. I think this is ready to be merged once all tests pass.

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