Release bump for v4.0

.nf-core.yml

@@ -8,8 +8,7 @@ lint:
 nf_core_version: 4.0.2
 repository_type: pipeline
 template:
-  author: Jasmin Frangenberg, Anan Ibrahim, Louisa Perelo, Moritz E. Beber, James
-    A. Fellows Yates
+  author: Jasmin Frangenberg, Anan Ibrahim, Louisa Perelo, Moritz E. Beber, James A. Fellows Yates
   description: Pipeline for screening for functional components of assembled contigs
   force: false
   is_nfcore: true
@@ -19,4 +18,4 @@ template:
   skip_features:
     - igenomes
     - fastqc
-  version: 3.1.0dev
+  version: 4.0.0

CHANGELOG.md

@@ -3,7 +3,7 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## v4.0.0dev - [date]
+## v4.0.0 - Chinese Baozi - [2026-06-22]
 
 ### `Breaking change`
 

assets/multiqc_config.yml

@@ -1,8 +1,5 @@
 report_comment: >
-  This report has been generated by the <a href="https://github.com/nf-core/funcscan/tree/dev"
-  target="_blank">nf-core/funcscan</a> analysis pipeline. For information about how
-  to interpret these results, please see the <a href="https://nf-co.re/funcscan/dev/docs/output"
-  target="_blank">documentation</a>.
+  This report has been generated by the <a href="https://github.com/nf-core/funcscan/releases/tag/4.0.0" target="_blank">nf-core/funcscan</a> analysis pipeline. For information about how to interpret these results, please see the <a href="https://nf-co.re/funcscan/4.0.0/docs/output" target="_blank">documentation</a>.
 report_section_order:
   "nf-core-funcscan-methods-description":
     order: -1000

nextflow.config

@@ -583,7 +583,7 @@ manifest {
     mainScript      = 'main.nf'
     defaultBranch   = 'main'
     nextflowVersion = '!>=25.10.4'
-    version         = '3.1.0dev'
+    version         = '4.0.0'
     doi             = '10.5281/zenodo.7643099'
 }