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Questions about filtering process of zumi pipline when using it to analyze Smartseq3xpress raw sequence data

Status: Open.

#413 In sdparekh/zUMIs;

· wxginpumc opened on Nov 25, 2025

Change STAR executable.

Status: Open.

#412 In sdparekh/zUMIs;

· wjbsb opened on Aug 1, 2025

The "Setting Optional parameters using Shiny" page in the wiki is empty

Status: Open.

#411 In sdparekh/zUMIs;

· RobinPranter opened on Jul 1, 2025

sampleReads4collapsing samples random rows for unique barcodes (RG entries with a single row)

Status: Open.

#410 In sdparekh/zUMIs;

· tstohn opened on Jun 24, 2025

Barcodes - "Warning! None of the annotated barcodes were detected."

Status: Open.

#409 In sdparekh/zUMIs;

· EvlampiaPar opened on Feb 12, 2025

zUMI parallel::mclapply AND 'strsplit': object 'GE' not found errors

Status: Open.

#408 In sdparekh/zUMIs;

· vishaa5 opened on Feb 11, 2025

Can zUMIs be used for Smart-Seq3 on only one sample

Status: Open.

#407 In sdparekh/zUMIs;

· realzhang opened on Jan 19, 2025

Syntax error loading yaml file

Status: Open.

#406 In sdparekh/zUMIs;

· iwanttoeatyo opened on Dec 25, 2024

BUG: split cannot open path error

Status: Open.

#404 In sdparekh/zUMIs;

· YinCY123 opened on Oct 7, 2024

One or more of your executables were not found. Please check back.

Status: Open.

#403 In sdparekh/zUMIs;

· Johnny3333 opened on Sep 30, 2024

/genomeParameters.txt: No such file or directory

Status: Open.

#402 In sdparekh/zUMIs;

· lysurgeon opened on Aug 29, 2024

Can zUMIs be used for DNA-seq data alignment?

Status: Open.

#401 In sdparekh/zUMIs;

· zhober opened on Aug 29, 2024