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1. Oncocyrix_MultiCohort Oncocyrix_MultiCohort Public

   A comprehensive end-to-end single-cell RNA-seq analysis pipeline supporting multi cluster single and multi-sample 10x data analysis

   Python

2. Fine-Tuning-DeepSeek-R1-on-Medical-Reasoning-Chain-of-Thought Fine-Tuning-DeepSeek-R1-on-Medical-Reasoning-Chain-of-Thought Public

   Fine-tuning DeepSeek-R1 for medical reasoning using Chain-of-Thought, LoRA, and clinical question datasets.

   Jupyter Notebook

3. GenAI-Powered-Bioinformatics-Chatbot GenAI-Powered-Bioinformatics-Chatbot Public

   A full-stack LLM-powered chatbot designed for bioscience and clinical research queries — from pathway analysis to molecular Q&A.

   Python 3 1

4. Automated-Gene-Pathway-Enrichment-Analysis-with-STRING-API Automated-Gene-Pathway-Enrichment-Analysis-with-STRING-API Public

   This Python script automates the process of gene pathway enrichment analysis by integrating with the STRING Database API. It reads a list of genes from an input Excel file, queries the STRING datab…

   Python 1

5. Immune-Deconvolution Immune-Deconvolution Public

   Python-based CIBERSORT runner for immune cell deconvolution using LM22, with automated QC, plotting, and seamless R integration.

   Python

6. GWAS-eQTL-Mendelian-Randomization-Pipeline GWAS-eQTL-Mendelian-Randomization-Pipeline Public

   AI-enhanced GWAS–eQTL–Mendelian Randomization pipeline for retrieving GWAS Catalog data, integrating GTEx eQTLs, and generating MR, colocalization, fine-mapping, QC, and visualization outputs.

   Python