amica v3.0.1

Version 3.0.1 (2023.08.08)

Stable version on webserver (bioapps.maxperutzlabs.ac.at) since 2023.08.08.

Changelog:

• fixed wrong protein id specification for FragPipe TMT in user manual and wiki
• fixed bug after FragPipe TMT parser

amica v3.0.0

Version 3.0.0 (2023.05.30)

Stable version on webserver (bioapps.maxperutzlabs.ac.at) since 2023.05.30.

Changelog:

• Additional file upload option for DIA (Spectronaut and DIA-NN).
• Additional file upload option for TMT (FragPipe).
• New feature added - option to highlight proteins in volcano - and MA plots (resolved #18).
• Updated IntAct version (2022-07-13).
• Changed default plot colors.

amica v2022.09.08

Version 2022.09.08

Stable version on webserver (bioapps.maxperutzlabs.ac.at) since 2022.09.08.

Changelog:

• option to not impute missing values.
• QC - and diff. abundance reports.
• Fixed error handling in upload.