Python Package for the downstream analysis of mass-spectrometry-based proteomics data
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Nov 21, 2025 - Jupyter Notebook
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fragpipe
Here are 10 public repositories matching this topic...
amica: an interactive and user-friendly web-based platform for the analysis of proteomics data
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Mar 30, 2026 - R
CWL descriptions for FragPipe Proteomics Pipline
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Apr 5, 2022 - Common Workflow Language
Mass spectrometry-based chemoproteomics pipeline for analyzing electrophile selectivity and identifying chemoproteomics detected amino acids (CpDAAs)
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Jul 17, 2025 - Python
🪆🦖 A snakemake wrapper around Nesvilab's FragPipe-CLI. In a perfect world, this pipeline was based on Sage.
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May 14, 2024 - Python
Systematic Quantification of Protein O-GlcNAcylation under N-Glycosylation Inhibition
bioinformatics proteomics mass-spectrometry glycoproteomics post-translational-modification tmt glycosylation metabolic-labeling fragpipe n-glycosylation o-glcnac o-glcnacylation bioorthogonal-chemistry tunicamycin
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Jul 8, 2026 - R
FragPipe-SpecLib: Simple library generation for FragPipe
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May 29, 2026 - Python
An pipeline for running FragPipe in Linux (heavy on the amino acid substitution project).
proteomics mass-spectrometry quantitative-proteomics quantitative-methods fragpipe amino-acid-substitutions alternative-translation
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Jun 30, 2026 - HCL
Java reader for the HUPO-PSI mzPeak mass-spectrometry format (Parquet-based), with a FragPipe/MSFTBX adapter
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Jun 16, 2026 - Java
Jupyter notebook for quality control of mass spectrometry data.
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Mar 15, 2026 - Jupyter Notebook
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