A model of high speed atomic force microscopy, based on density maps from IMP's Nuclear Pore Complex Transport module.
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Oct 20, 2025 - Jupyter Notebook
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hs-afm
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Differentiable High-Speed AFM (HS-AFM) simulation for protein structures. JAX-powered toolkit for generating synthetic movies with realistic tip-dilation and scanning lag.
simulation structural-biology computational-biology biophysics protein-dynamics jax atomic-force-microscopy computational-biophysics hs-afm computational-structural-biology differentiable-physics high-speed-afm afm-analysis
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Jul 2, 2026 - Python
Jupyter notebooks for end-to-end differentiable blind tip reconstruction
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Aug 31, 2024 - Jupyter Notebook
Files used in Ogane et al.
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Nov 24, 2022 - Jupyter Notebook
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