ld-tools: toolkit for linkage disequilibrium calculation designed to work locally
Small program to mask positions that are likely to result in PMD artifact from a BAM file using a predefined SNP catalog
Annotation pipeline for HPDS
Сompute support for ALT and REF alleles from aligned reads
Progetto di Elementi di Bioinformatica, A.A. 2021/2022
Tools to discover natural selection given multiple evolved DNA sequences (e.g., gnomad cohort, or multiple tumor samples)
Investigating unmapped reads within next generation sequencing data will provide additional information regarding the source of the trace microbial reads.
Bioinformatics CLI tool to generate WIG tracks from SAM/BAM files
Pysam module (python2.7) singularity container
Cloud-based energy infrastructure modeling, simulation, and scenario-planning platform.
Structural variant analysis of common disease-associated genes in 1000 Genomes long-read sequencing data
vue app with flask REST api to process genomic data
A screening pipeline that uses existing Oxford Nanopore long-read sequencing data from the 1000 Genomes Project to identify samples carrying specific copies of three genes of interest as cloning candidates.
Per-position and summary statistics for BAM files
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