MMseqs2: ultra fast and sensitive search and clustering suite

A taxonomy for open source cryptocurrency, blockchain, and decentralized ecosystems

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

Accurate sample inference from amplicon data with single nucleotide resolution

Bugcrowd’s baseline priority ratings for common security vulnerabilities

A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV

Rinvex Categorizable is a polymorphic Laravel package, for category management. You can categorize any eloquent model with ease, and utilize the power of Nested Sets, and the awesomeness of Sluggable, and Translatable models out of the box.

Fast taxonomic classification of metagenomic sequencing reads using a protein reference database

Taxonomies used in MISP taxonomy system and can be used by other information sharing tool.

A taxonomic toolbelt for R

A universal, industry-neutral taxonomy of cognitive core skills (perception, memory, reasoning, planning, action, verification, learning, governance) for LLMs, SLMs, AI agents, and world models — with schemas, 159 skill cards, benchmarks, and CI.

This is the repository for the BioCLIP model and the TreeOfLife-10M dataset [CVPR'24 Oral, Best Student Paper].

Application and Python module for average nucleotide identity analyses of microbes.

DeepTime Mammalia：交互式哺乳纲演化树，3D 螺旋序幕 + D3.js 动态时间树，跨越 2 亿年 | Interactive mammalian phylogeny with 3D spiral intro & D3.js dynamic timetree spanning 200 Myr

OneNote (desktop) add-in to manage OneNote pages by page tags

Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

🐞 Convert NCBI taxonomy dump into lineages

Sequana: a set of Snakemake NGS pipelines

Contains a list of Popoto.js examples

~ Lightweight, Flexible & Rapid WP Development Framework ~