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Update unified checklist with new Darwin Core terms#94

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LienReyserhove wants to merge 17 commits into
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new-dwc-terms
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Update unified checklist with new Darwin Core terms#94
LienReyserhove wants to merge 17 commits into
masterfrom
new-dwc-terms

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@LienReyserhove LienReyserhove commented Dec 29, 2025

This PR updates the unified checklist with the new Darwin Core terms degreeOfEstablishment and pathway. The PR was triggered by the following issue: gbif/checklistbank#306 (comment)

In short, we access the verbatim information (e.g. https://api.gbif.org/v1/species/141117232/verbatim) included in the GBIF Species API to retrieve ´degreeOfEstablishmentandpathway`.

Major updates in this PR:

  • Update 1_update_taxa.Rmd:
  • Update 5_unify_information: especially important here is this commit: 3ee96af. This step is needed to retain degreeOfEstablishment and pathway in the distribution extension. I'm not sure if this step is correct.
  • Rerun full script to retrieve all updated taxa, distributions, description and species profile information. This resulted in a bulk import of new species and related information

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