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feat: add schema tests for core clinical models #1302

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209 changes: 209 additions & 0 deletions models/core/final/schema.yml
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version: 2

models:
- name: core__patient
description: >
Patient dimension table containing one record per unique patient.
columns:
- name: patient_id
description: "Unique patient identifier"
tests:
- not_null
- unique
- name: sex
description: "Patient sex"
tests:
- not_null
- accepted_values:
values: ['male', 'female', 'unknown']
- name: birth_date
description: "Patient date of birth"
tests:
- not_null
- name: death_flag
description: "1 if patient is deceased 0 otherwise"
tests:
- not_null
- accepted_values:
values: [0, 1]
- name: tuva_last_run
description: "Timestamp of last dbt run"
tests:
- not_null

- name: core__encounter
description: >
Encounter fact table containing one record per unique patient encounter.
columns:
- name: encounter_id
description: "Unique encounter identifier"
tests:
- not_null
- unique
- name: encounter_type
description: "Type of encounter"
tests:
- not_null
- accepted_values:
values:
- acute inpatient
- ambulatory surgery center
- emergency department
- home health
- hospice
- inpatient psychiatric
- inpatient rehabilitation
- lab
- office visit
- outpatient
- outpatient psychiatric
- outpatient rehabilitation
- skilled nursing facility
- telehealth
- urgent care
- name: encounter_start_date
description: "Date the encounter began"
tests:
- not_null
- name: tuva_last_run
description: "Timestamp of last dbt run"
tests:
- not_null

- name: core__condition
description: >
Condition fact table containing one record per unique patient condition.
columns:
- name: condition_id
description: "Unique condition identifier"
tests:
- not_null
- unique
- name: patient_id
description: "Foreign key to patient"
tests:
- not_null
- name: condition_type
description: "Type of condition claim based or clinical"
tests:
- not_null
- accepted_values:
values: ['claims', 'clinical']
- name: tuva_last_run
description: "Timestamp of last dbt run"
tests:
- not_null

- name: core__procedure
description: >
Procedure fact table containing one record per unique patient procedure.
columns:
- name: procedure_id
description: "Unique procedure identifier"
tests:
- not_null
- unique
- name: patient_id
description: "Foreign key to patient"
tests:
- not_null
- name: procedure_type
description: "Type of procedure claim based or clinical"
tests:
- not_null
- accepted_values:
values: ['claims', 'clinical']
- name: tuva_last_run
description: "Timestamp of last dbt run"
tests:
- not_null

- name: core__medication
description: >
Medication fact table containing one record per unique patient medication.
columns:
- name: medication_id
description: "Unique medication identifier"
tests:
- not_null
- unique
- name: patient_id
description: "Foreign key to patient"
tests:
- not_null
- name: tuva_last_run
description: "Timestamp of last dbt run"
tests:
- not_null

- name: core__lab_result
description: >
Lab result fact table containing one record per unique patient lab result.
columns:
- name: lab_result_id
description: "Unique lab result identifier"
tests:
- not_null
- unique
- name: patient_id
description: "Foreign key to patient"
tests:
- not_null
- name: tuva_last_run
description: "Timestamp of last dbt run"
tests:
- not_null

- name: core__observation
description: >
Observation fact table containing one record per unique patient observation.
columns:
- name: observation_id
description: "Unique observation identifier"
tests:
- not_null
- unique
- name: patient_id
description: "Foreign key to patient"
tests:
- not_null
- name: tuva_last_run
description: "Timestamp of last dbt run"
tests:
- not_null

- name: core__immunization
description: >
Immunization fact table containing one record per unique patient immunization.
columns:
- name: immunization_id
description: "Unique immunization identifier"
tests:
- not_null
- unique
- name: patient_id
description: "Foreign key to patient"
tests:
- not_null
- name: tuva_last_run
description: "Timestamp of last dbt run"
tests:
- not_null

- name: core__appointment
description: >
Appointment fact table containing one record per unique patient appointment.
columns:
- name: appointment_id
description: "Unique appointment identifier"
tests:
- not_null
- unique
- name: patient_id
description: "Foreign key to patient"
tests:
- not_null
- name: tuva_last_run
description: "Timestamp of last dbt run"
tests:
- not_null